NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1068731

Scaffold Ga0209348_1068731


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1068731 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1152
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027158Metagenome195N
F101070Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10687311F027158AGGAGMATTTKTPITDLTLAEVISLTQAGLIGLKDGVPVYTEKADRAIKAGAVKARRQAVLGSVTEFFASPRGQKAKFFSVKPTSGMFAACATAINMHVDATREDILWSLKQLEKKGLAKQVGIRGEIVGEDRGLPKKVMVVVPVSEVNNFQRRWVHSIEAAKAEEAPAIDAPAE
Ga0209348_10687312F101070GGAGGMGRGKIRVDPMKLEVGDLIVTDGRMSLELGDVLLAVHKLSGEEMCESGKRHPFIDGRRVGDHWRLLSRLGVVEIWLDPYASWVVQVVKGQKKTAT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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