Scaffold Ga0208919

Basic Information
Taxon OID	3300025128 Open in IMG/M
Scaffold ID	Ga0208919_1000644 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025128 Open in IMG/M

Scaffold ID

Ga0208919_1000644 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22509
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (85.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22509

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (85.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp.	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-13.003

Long. (^o)

-80.809

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F049037	Metagenome / Metatranscriptome	147	N
F049696	Metagenome / Metatranscriptome	146	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F071313	Metagenome	122	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100064410	F049037	N/A	MEHNETMTESPCDTCHNYWICVEGSRACSDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLRTFPLIEDPLGFYFLRHIDGAIENTYTGKSSKRLRNAQAACRQVVLEAKVRESTTRQYDHLGAVVRRQMGRNVAALRGDEDQGEN
Ga0208919_100064411	F049924	GAG	MRKYATQKLIAKDVPVHLKGLFEGQNLRFRGRGSRKRAVDIVMNSKKLIDKYGTNGLLARFNQDLPLEFADRMSVYSR
Ga0208919_100064415	F049696	GGAG	MSGIELKPMKIHTQKGKRRLWLEQQRYGLDGFECGSKFKVTYHDDSIEIESDPEGSNKVFTRVKKASKLHPTERQFAIVSLHNSKLKAIFGDTEDGVDTFCRYEQMPGYLKIWPADKVESFADELAEGIEQQLAA
Ga0208919_10006443	F071313	GAGG	LKQSENFCILPNSLLPAMSELSKGEIRALIGVLSFRDPNSTNLAFPSINTIAKRCGMTPSYCSKQLNRIAERGGILKINRRFNNSNTYDFVWTGCTPPVEGVREPPVHVPLPNRPSNRPLSIGEFLKMYPKPSPPSGWQSYIWANATKEWKDKGLEEIKDQIYLDIRDRLQREWRDVEYWPNPATYLKQQWWTQPMEGRTTTDRETSDTRYF
Ga0208919_10006444	F041251	AGG	MNVYEIDQIAAIAAGIKSGEPVKNDIGTVIDGFFWFPDEMKWAAEWQKTEKSESPDGYFAMLLNPDIFDDEEDDEEIMAGIEYWWHRSQIYSAAYLINKQLPKDGSHEDLAKQSLEELLEMQRNVKVAFEEEGMETGKKAEPKDIWKVVRTTAQYIHNNVRGVH
Ga0208919_10006448	F097503	AGGAG	MDGHTRTEMDCTTEAVVLFEDVVDVFEHRMIEGCIANEFKCTYNAEKGEFVAEINGKFYVAMTREKK
Ga0208919_10006449	F060975	AGGAG	MGKTIRRNPVAKNIEKFNTPKTIRDRKKDFYRPDSKREFEEAIEDMSFDEDNRKDAIITQYQDDLARSQEDGWPYED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208919_1000644

Overview

Ecosystem & Geography

Associated Families

Sequences