NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1000676

Scaffold Ga0208919_1000676


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1000676 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21728
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (86.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019554Metagenome / Metatranscriptome229N
F094416Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100067629F019554AGGMSLDKLKDISLFEGKSLDEIFNVIFKQSLEEREEAMATFKRFREMVGDSEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLESESKDSVNANDILDLLDKEGIAPKRFMPESDGEKENDQKEDDQSIVEFPQLNKKV
Ga0208919_100067630F094416N/AMFEILIALFIILTASLGIVLYKSINRLSFYEDMYGDMYGRFATLGDSIRGVLSREIYSDDPVIRDFINQLQDIEYYLQQLDESYKFNTLGEGVEDES
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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