NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1001054

Scaffold Ga0208919_1001054


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1001054 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16641
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011351Metagenome292Y
F025720Metagenome / Metatranscriptome200Y
F077934Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100105410F011351N/AMELKKYIESVAKVVIPSVDHLQLVEYKEKELDFAYGMEQYHTSFRRMLKQIIRIVWR
Ga0208919_100105415F077934GGAMQSKWGWYNVLYSLANNNILNIEKITRLPILEVLTYLSFSQDYNNKQRSNYDNF
Ga0208919_10010544F025720N/AMAWKLKKEWEGKSIDSLNIPLDDLTQKQIAGLNDSVRSALFVEDKPKKKKKDDSI

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