Scaffold Ga0208919_1001633

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208919_1001633

Scaffold Ga0208919_1001633

Overview

Basic Information
Taxon OID	3300025128 Open in IMG/M
Scaffold ID	Ga0208919_1001633 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12575
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (82.61%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F008820	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_10016333	F008820	AGGAG	MADLTQYLAAKYNKMIGEISTDLGRTADDLANTQNIIKALKNPDMLINGVSLTLDMVQVMENGDIRILPPPPAPDITETCVKAPYEASGVPEKNGKKDAKDLVNVS
Ga0208919_10016334	F001034	AGGA	MLASQQTYEDAQYQALAPIGPQEPIPAGVHDIELSWDRKRGYMRVIIDGATWHFKEYLGKAQITGTDSKRGRIYLRAMARIDGETLTTYRDPSAEPHAEVEGERRESTHNRLCYRRQSQEWRLRDERMDWNHPEALRFTKNYVGDLNAEWHMADSVAHIYHNGYAIIDENNIAHLYE

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