NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1001807

Scaffold Ga0208919_1001807


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1001807 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11818
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077177Metagenome117N
F091871Metagenome107N
F103080Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100180710F091871AGGAGMAGAKGRPRRMDSEHSTYNVLLPETTITAIKEEAETSGVSSAQVVRDVLADGLRGEKKKNGTIHNWCEAIKLAIQTVREAYPVPRFADGKTLGDQIAGKIEDAINKRKRSDGE
Ga0208919_100180714F077177AGGAGMAKNPQLGGGAIFRNQRKVEKLTLAAQYTPDGHPKAPELSGDVGFTKEAVKMLVAQFKDGKTEVSQVTNQHEAKLEIAASIKMQRDGTTPYLSVWFSEPYEKPADPKPSDDLDDDIPF
Ga0208919_100180718F103080GGAVIRRALRDLCERDDTLRDDAIAWIGDGKGKDFVEVCIAADLDAGSVAKLAHRMLALGPDRARLYLTRVMEVTTDDRHNRSIDQ
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