NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1001968

Scaffold Ga0208919_1001968


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1001968 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11170
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041491Metagenome160Y
F044200Metagenome155Y
F059454Metagenome134Y
F076604Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100196818F076604N/AMCEVSPCCGCNYENSWITDCCSVEIYSESSKCPSCKENTECSGYICNECGNWFEYPEESREREARLYENYLEEKADARRKYGE
Ga0208919_100196823F044200N/AMSTLPFNLNTTTSGKAQGEKVEYITPGAYECKITGVSTSEKLEDYKGSPFIDYAVTSNGKVGRCRFWAVKETDKPSTKEWKTKQIKDFLINAGVRDFSDDSKAMNDALGNSLMVTFISEEYIGKNRDTSEPVIRTSVKYRWSAKSGGKCTYNANMNQELSEEEMSEFSMQHSEWSKANEAVSASSDDEDMPF
Ga0208919_10019684F041491N/AMTDLMLQSISFNVSKTINIGNFEAVKINYGESVAVDPTRDVEEQRKEMIDNCYKVVGRETKVWQGLKAVQHVDSQKNTTVLKAKSYNK
Ga0208919_10019685F059454GAGVKSYLLKKLIKGFKINPKHSGLDLVALPYKYTNEKILVKHSNKKMIIDQDTPLLGKQTFPDKFGRDKTYTLYYYPWQPSKNQIKLEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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