NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1003905

Scaffold Ga0208919_1003905


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1003905 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7129
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001034Metagenome / Metatranscriptome798Y
F007978Metagenome / Metatranscriptome341Y
F008820Metagenome / Metatranscriptome327Y
F081211Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_100390510F081211N/AMNKNLSLVATLVPLIIVAIGLVGWVLSLRSDVTDTVGQLEAVQAEVEDVQSRLTELEKSLAIADDQMNTINAEHEIIGEMFKEMGEIQPAGERRTYGGYN
Ga0208919_100390511F001034AGGAMLASQQTYEDAQYQALAPIGPQEPIPAGVHDIELSWDRKRGYMRVIIDGKTWHFKEFLGKAQVTSCDSKRGRINLRAMARIDGETLTVYRDPHALPHQEVEGERRESTHNRLCYRRQSQEWRLRDERMPWEHPEALKFTKDYVGDLNAEWHMADSIAHIYHNGYAIIDENDVAHLYE
Ga0208919_100390512F008820AGGAGMADLTQYLAAKYNKMVAEVAADLGKTADDLANTQNIIKALKNPDMLINGMSLTLDMVQIMENGDIRILPPPPAITEVCVQEPKSNGKKDTKELANVS
Ga0208919_100390513F007978AGGAGGMAITFNTDRLQGLEGTTINGVYGRIQIVTVKKFDATTDPDEAASFRISYDVVLHATAVKRNAAGEYPQWGNRLRSREIDHFTAEVTADQMNAADANGYTLAYADLKAKLAAGDSPIASSIQDA
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