Scaffold Ga0208919_1007221

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208919_1007221

Scaffold Ga0208919_1007221

Overview

Basic Information
Taxon OID	3300025128 Open in IMG/M
Scaffold ID	Ga0208919_1007221 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4781
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F067202	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208919_100722110	F020815	GAGG	MRLYMNKQGEWVGTQAEAKKIKADMVDVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPNPGTVARKPHKYDFWDNIRDVAENCSLTDFNVALAIFMERVHDIAEKQKETQQ
Ga0208919_100722112	F028349	GAGG	MQVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEIGDVGYFKPRLGTDEWIYDWQYVKETTDEDLKEALGR
Ga0208919_100722113	F067202	AGGAG	MQYKDIVIAAEDLECHTIDTVAEAIKDHIIDLGLATSKTLTGFTWRIDVRMRTDDAS

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