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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025128 Open in IMG/M |
| Scaffold ID | Ga0208919_1007504 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4672 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 90 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027317 | Metagenome | 195 | Y |
| F027816 | Metagenome | 193 | N |
| F037430 | Metagenome | 168 | Y |
| F043886 | Metagenome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208919_100750410 | F027816 | GGAG | MKSFKNRSHEVAYNMMEISVELIDEVYKKVDKLADANSHRERNGLKLIDSGHFRWDIRQLKINTKNKLQKIMDLLEEYGDDAKLVTHEPEEKQ |
| Ga0208919_100750412 | F037430 | AGGAGG | MKYEIDAIRCYQSVMFEKTNETFFASRQINNRKPLELEIIESINMISIKSERDHILIPLTNVSCVYLKSPMKKEQEEKDIAERAKIPTPNIIKKPRVKRSAYSS |
| Ga0208919_10075045 | F043886 | N/A | MSKKKQKVPSFKELQKAWYKILDDSGFDDIERSGKNKDQFTIDEYSGILKRPTSVVRAKYDLFIEKYYNIASFLSQNATFLPKIDLKILELHGNGYTTQRISDYLRENFEYPLQKTPRKRKPYSIFFVHTKLKYLKLLILIYARTDCLRSVKISWQSM |
| Ga0208919_10075046 | F027317 | GGA | MTQDKKSPKRILLPPKKRPISLETSSVIPATELLLHDAKAIIGAELAHYRSKAVRGVTLDPKEARIVQGYLESLVKIQREEREIADSQDLSAMSDVELLRLAKRVLENNNVDTIDKNERSKNESE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |