NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1014296

Scaffold Ga0208919_1014296


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1014296 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3118
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004867Metagenome420Y
F018194Metagenome / Metatranscriptome236N
F101302Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208919_10142961F101302AGGAGMGDRVSISFRKTEETYGGPTEKKTHLEESPALFHHWGGTTFPKFAFDWFKVLRKHLKKNHTGSDPLTRLEPRNLMVQFINAIRDEENFRLHRYENKTKDIRGGTWSIDDNLLSYSIY
Ga0208919_10142963F018194AGGMAKDERLKLYEREHFDEKVEKKLEPVIEVEELRIKATVQNILNKGTKTFAKNIGADKVINALQDAEDRLKKASRNAYIFFDQSARKEVAWSKLKEYKFDRDDKDKISVSDCQHQLEKWAEAQAKQLAERTPQGQRLAYLKAVKELMKDKVKEASIPSELIGQLSGLMKLAGVSWDTKLPALPPPKSK
Ga0208919_10142966F004867N/AMKNKIENVLKNGDSFKITFYPQNINFDVDEAKMQSTTRLAKWDSDCAFISQPKTKKTSPYVKFFDVEKNQYRTATTMYRAVSIFINNQHYAWNRY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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