NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1034640

Scaffold Ga0208919_1034640


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1034640 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1809
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010435Metagenome / Metatranscriptome304N
F050019Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0208919_10346401F050019GGAGLGIADNIRGFFSQQEAQTEKKSFNNFPTSQVVFPFNSDAGFFSGTNQMSPEGNSAALACLNVLGTAFSEPPLKVYVKTQE
Ga0208919_10346403F010435N/ANRRIYQISSKNQWVDRVKAINKMLNEQIVQEVYAQVGETARDLADNLKPLIFRIISEINERDLASMNPTELKGILDVCYKMISQIYGLGSPQVQVTQVEYPQIKFKWDWEQDDDSDY

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