NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1040129

Scaffold Ga0208919_1040129


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1040129 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1648
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F039872Metagenome163Y
F062791Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0208919_10401291F039872AGGMSSNISGLIDRVYREYLEPMDDVTSYTTLDTGVNDSITTLEFAGALLTQEEEDAMDAGTIIECDTELMRCVSLDTVNNQVTVVRGVRGTSAATHSAGALIKIAPPFPRQVVFDAVKDQINNLFPTLFAVDTQSITTGTGYTLIGDYSSPGTHNYIVSILSAISQYTDFSVGSDTTGINFNPVTSSLVELPNPFTYTDADGVSRTITYSTGPSVVHAIQFSGISSGHTAHVTFKKKFIEPTAEDNTLAEVGLETEYEPIIMAGVAAQMMSGKDIPAATSDYISDQMSLSSYPVGSSNSIRNSL
Ga0208919_10401293F003693AGGAMIQSKLALIDVSADNNDSLGVEAEGMLLCGVQFPASMTGTAITFDFSLDNSTWVDVKETDGTEVSYAVSAGDVVRVDPSGWAFASNGYIRVSSNGTEAADRKIVLHFRHS
Ga0208919_10401294F062791N/AQTVFTNIPGFGTVFVRDLDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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