NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208919_1098879

Scaffold Ga0208919_1098879


Overview

Basic Information
Taxon OID3300025128 Open in IMG/M
Scaffold IDGa0208919_1098879 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)940
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009110Metagenome323N
F022198Metagenome215N
F030097Metagenome186N
F044196Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0208919_10988791F044196N/AMEDITDKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQINKQ
Ga0208919_10988792F030097N/AMRALDIAGTQSKVSSCMGFVASGAARDAYRRLLTASTVGESKGEQRKSPFSRTTKEKVKK
Ga0208919_10988793F009110GAGMTESMIASAVRYMESLKDKVPPAGEDDIIVKHGTTHMRTLGIDPHEAVKAVDKLREQGMTAKDAYVEVGMTQSQYYKTKKGITNKT
Ga0208919_10988794F022198N/AMKTIQQYRKDHPQLSEEQIHSAYHITEIDAPEFSVSGFTLIAPGRCLAIHENGNIAPLRLKESY
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