Scaffold Ga0209594_1000291

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209594_1000291

Scaffold Ga0209594_1000291

Overview

Basic Information
Taxon OID	3300025130 Open in IMG/M
Scaffold ID	Ga0209594_1000291 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	34578
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Ash Meadows Crystal Spring, Nevada
Coordinates	Lat. (^o)	36.42	Long. (^o)	-116.32	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017154	Metagenome / Metatranscriptome	242	Y
F042089	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209594_100029114	F042089	GGTGG	MSNDEMKLLLSALEVEVVQEALELYVQVRPVPIDGRFEYRYRAAQSVLASLRQGNHEFGTFPRGDDEEAARVEEPRPERRPLRERVED
Ga0209594_100029125	F017154	AGCAG	MEPVARTWARVAGIALLVAGAGLTVVLGWQFLDLVQHEQVRREFTSSSLIFGLILLALCGICWQAGYRLFFGRPDRSGTLFSRPAWFAIGTGLVVITTLMAVVIVEARRPSVLDVQVILFLAGVGVWCLVLALRR

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