NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1000051

Scaffold Ga0209128_1000051


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1000051 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70123
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (81.97%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029467Metagenome / Metatranscriptome188Y
F054097Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209128_100005144F054097GGGGGMVKYILIMFVFGTFLLARDSHSETKPTPTITINDDDSDKLYRKRRGKGNKGRRRGGNGLR
Ga0209128_100005149F029467N/AMEETKKGQTGGKKMIDDFMHVLENYTDANLHSVAARKVIAEALVQHMCDHHIVTFTDYEAAVNDPNMKEFIKNCGCKPTQEDIPVKRGL

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