Basic Information | |
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Taxon OID | 3300025131 Open in IMG/M |
Scaffold ID | Ga0209128_1001524 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15765 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (81.82%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -104.89 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003161 | Metagenome | 504 | N |
F006641 | Metagenome / Metatranscriptome | 368 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209128_100152416 | F003161 | AGG | MTRAGALDRMDVLLSTITDPPFTAVVRAEPLALAGTPVLAFWVQSRTPGWQTLGNIGSTTTVMVRAYFRMQAAADVRESIELQVWDAMVQIETKLRSDADLAGNVTDSSVGPAQVQYLTIDGAVFRVVTVPFEIQIYEEITITP |
Ga0209128_100152419 | F006641 | AGGAGG | MAKTMCIQNFTFGATGETFEAGVEYDVPAATLKANPDYFKSSGKPSNKMAGTDEDKSDGGDEEAAEAAE |
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