NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209128_1001977

Scaffold Ga0209128_1001977


Overview

Basic Information
Taxon OID3300025131 Open in IMG/M
Scaffold IDGa0209128_1001977 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13555
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (64.10%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090233Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209128_100197732F090233N/AMKVRIHGKNLPSKFRHGVFGMTHLSMRNLLDNRRVVNNLEIDIHFRHHADNGEAMIHENEFRSKPRKFRVIIDPYKVRVDDYGRELEDEEHANEMFKVLGHELVHVKQYIVGDLAMKVKGMYWKGELTDVKSMKDYFKSPWEVEAYGLERYLWLNFIDFWTSEIENNDLFKDCLD

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