NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1000214

Scaffold Ga0209232_1000214


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1000214 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36997
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (69.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016083Metagenome / Metatranscriptome250Y
F025855Metagenome200Y
F086169Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209232_100021429F016083N/AMSLYKYTQKEAANLLIGQNGFDVIAEHDTTVVNPDTGSWIAIQALGKDSSGTTEFLKIKVTSNIGDDISSFVNLIPGEILYGNFSGIVNHTDSTAVCIAYRG
Ga0209232_100021441F025855AGGAMKKCIHCNKENKGGWFYCKSCGKQASESKFTTNMWMTSDLGKRTDVEFSTQSMSDNVKSMRKNLGYAS
Ga0209232_10002147F086169AGGAGMSDQQPDWDKITEGKIRHGIAVEAFGKGMELNEDNMRLMEQWVQFIIHGYDGIKDILEQKKALSSEEVKKEIIDKFDGEVVKETDEDYVKNEINKAVKTLGQKDKNKVLYQLKQGNITVDNLQVCLEKIEVMKHF
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