NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209232_1001206

Scaffold Ga0209232_1001206


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1001206 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14265
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (25.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013783Metagenome / Metatranscriptome268Y
F032332Metagenome180Y
F051263Metagenome / Metatranscriptome144Y
F064641Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_100120611F064641N/AMDSQETNDENAIRHYKGTVKQFKQMFDDLADGKDTNAYDSPVRQGYDIHPTREEDNKSPHWEEGYEDDETQNENHIPPFKNFLK
Ga0209232_100120613F051263N/AMSISNFKDFGLNEEHEFNPNETKERLKRREQQNIERFRAAQDREDPFAVEYYQMRISIDKLDLKKLEYQTKIHQLKQKYKK
Ga0209232_100120619F032332N/AMMEKGKGFSDEFIRSLLLTLEHTNFDEYMKLSYAVMMQSPNAVLKREDAIETKVTAIDEMIKFFEEKEEYEKCTNLQKLKQLLFLDTKTGEDEL
Ga0209232_100120626F013783AGTAGLILEGITFKLALDFFIFLKKNKITSTSIKVDFFNRVKHEYIDFADVAAMEKYYNSNYKPLDNCNLGDLVSISFFLAESNLYDFSTEFKAIDVTNNLKLETGSAYDRQRNSGRQVYIDRQIQLIKNAVTDYVKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFTSVKDTSQFPYNDVKIEEFPPN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.