NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1005593

Scaffold Ga0209232_1005593


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1005593 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5564
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006221Metagenome / Metatranscriptome378Y
F031509Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10055934F006221N/AMKKHKYITVLGKNNCKMPLPELRQYGPVISVSNHMHNAGHLDYVWTRQEKDLLWFLQQRPSPVNCVTTSELYKKYVFYDQVHSFPPISPQFNLTLDVNTDDQTLALLTALGLAQQRIMLVGFDISDPRVLKDLRSIIMLHPDMKFYFLCNPPKTKQLDHCSNAECVLFKDIGSLKND
Ga0209232_10055935F031509AGGAMTDNKINYILKVMWPPHCRNRSREVLESRADIVKEMNGIRNKIENFLKASCSGSFKVSDEYDMKGFNVAFEQGPDVYNFILEQATIGYEVEREIGRYNIFSDKYIKHKLLYTAKGIVIA
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