Scaffold Ga0209232_1018296

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209232_1018296

Scaffold Ga0209232_1018296

Overview

Basic Information
Taxon OID	3300025132 Open in IMG/M
Scaffold ID	Ga0209232_1018296 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2781
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F023319	Metagenome	210	N
F085807	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209232_10182961	F085807	AGGAG	MNNLWDKDEKKMYRKLFKEYKREGCSNEEARMYAKLDCKNSIGLDIDSAEKLYKTALKDITXHYEINYYNI
Ga0209232_10182964	F023319	GGAGG	MSKKIKCHRCKKNKAYPEDMENRASNLLLCDDCYTELRYLMADYLDIHIQEIKIXSVAHN
Ga0209232_10182968	F008925	AGGAG	MTTKSKPKIDAVTLNLVNKLKQIDDTINEGAWEYIHLGDILRLQDAFHTAINHYDLKKKGGIGEHGIDAGKYTQFWHSDYVCHTDPEAYDPSKVEEDLADDSL

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