NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209232_1029523

Scaffold Ga0209232_1029523


Overview

Basic Information
Taxon OID3300025132 Open in IMG/M
Scaffold IDGa0209232_1029523 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2105
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020115Metagenome / Metatranscriptome226Y
F025275Metagenome202Y
F025729Metagenome / Metatranscriptome200Y
F084107Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209232_10295232F025729N/AMTDEIIARLEFFEETYAGEIETWVDPVTNTYYHVPIEIVRDFDNIEKL
Ga0209232_10295234F020115N/AMMTYEQFELLRKWADRVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0209232_10295235F084107N/AMITQDLNLQDLTLEISSAFNDTGAYWKLIDVLSNQNKILNRDEIEELVDRLEAFITQEVQEIIDER
Ga0209232_10295237F025275N/AMKYYALLHGVCGLAEGYSDTTVRWFNDLDKAMEAKRKTLESLMCRYEEVASTTDGMQDIITMDADEGEQEILKIIEVKPTWPENNSIREYLVWDQMNCEAPFDGDYMPTDLSVIKDLCERQEAVADTFDVESFHEFVRDLWYGNTAMFDADDLCIYYFQMPKVHLPSQPVEFKS
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