Scaffold Ga0208299_1061911

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208299_1061911

Scaffold Ga0208299_1061911

Overview

Basic Information
Taxon OID	3300025133 Open in IMG/M
Scaffold ID	Ga0208299_1061911 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1380
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F008820	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208299_10619112	F008820	AGGAGG	MPDLTQYITSKYNKMISELIADLGATSDSLDEALNIIRALKNPDMLVNGTSNLTLDRVQVMENGDIRVMPPPPAPAITEVCVQEPKSNGKKDIKELANVS
Ga0208299_10619113	F001034	AGGA	MLASQQIYEDAQHQSLAPIGPQEPIPAGVHENIELSWDRKRGYMRVIINNQTWHFKEFLGKAQVTGTDNKRGRIYLRAMARIDGETLTVYRDPSAPFHSEVSGERRESTHNRLCYRRQTQEWRLRDERMPWEHPEALKFTKDYVGDLNAEWHMADSVAHIYHNGYAIIDEHDVAHLYE

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