Scaffold Ga0209336_10000077

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209336_10000077

Scaffold Ga0209336_10000077

Overview

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10000077 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	44756
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (84.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016674	Metagenome	245	Y
F020255	Metagenome / Metatranscriptome	225	Y
F042935	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_1000007710	F042935	GGAG	MYNYANIIRQLEAMSPAHQDEFAQRLIEKNSSLAVAMSTKINIAHQDKYYTDTEAMDESLKTRGHVQ
Ga0209336_100000775	F016674	AGGAG	MSKKSNVINFKKEKLKKFDEENEIIFTVDDENYTIGECVEQSQNDNGMEFVFRLDLEDDDETIH
Ga0209336_100000778	F020255	AGGAG	MPSPSEIQSMLPLYFQLLFFAVAGALIVGVFFSIVGWFFRNAVFIMIIVAILFAINYGYIDLTNLFGAVKNDNAFITDLLQR

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