Basic Information | |
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Taxon OID | 3300025137 Open in IMG/M |
Scaffold ID | Ga0209336_10000619 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18089 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (32.35%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.2833 | Long. (o) | -134.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005706 | Metagenome / Metatranscriptome | 392 | N |
F020903 | Metagenome / Metatranscriptome | 221 | N |
F029278 | Metagenome / Metatranscriptome | 189 | N |
F038672 | Metagenome | 165 | N |
F043411 | Metagenome / Metatranscriptome | 156 | N |
F056150 | Metagenome | 138 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209336_1000061910 | F043411 | AGAAG | MLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK |
Ga0209336_1000061914 | F056150 | N/A | MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLKKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS |
Ga0209336_1000061920 | F038672 | N/A | MDELDVMLRKNKLDIMIIKASAEVKKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDISKLKYENAVAYKENAILKADFSTYKHNLKKAELESNKNG |
Ga0209336_1000061923 | F005706 | N/A | VKESRVLKALGLSSLDIQNMLMNGMTMPEIAKKYKITYISLVQAFNIQKKDFKYIDYIQPKKEVEDIKPVSFTFDRLYSEESLNENELLAFYKYEQKNKAYFEQRTTLF |
Ga0209336_100006195 | F020903 | N/A | MSQQLDIFGFDADQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDRKGQPWEIKAPNSPYQFKKGPKVSHVRQWAKSKGLNEYAVRNSIAKTGIRPRYFFDNCMQETFYGQAFDKFKTEIRIVSGERIAKGLKEILKK |
Ga0209336_100006196 | F029278 | N/A | MEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPKQLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAQDNEEAIFNNLHHILTTICRPVKKTLFGWKHINVDSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTCLIKQAEKMTKEAREELDLVNAGDGGTP |
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