NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10000619

Scaffold Ga0209336_10000619


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10000619 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18089
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (32.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005706Metagenome / Metatranscriptome392N
F020903Metagenome / Metatranscriptome221N
F029278Metagenome / Metatranscriptome189N
F038672Metagenome165N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_1000061910F043411AGAAGMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK
Ga0209336_1000061914F056150N/AMDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLKKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS
Ga0209336_1000061920F038672N/AMDELDVMLRKNKLDIMIIKASAEVKKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDISKLKYENAVAYKENAILKADFSTYKHNLKKAELESNKNG
Ga0209336_1000061923F005706N/AVKESRVLKALGLSSLDIQNMLMNGMTMPEIAKKYKITYISLVQAFNIQKKDFKYIDYIQPKKEVEDIKPVSFTFDRLYSEESLNENELLAFYKYEQKNKAYFEQRTTLF
Ga0209336_100006195F020903N/AMSQQLDIFGFDADQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDRKGQPWEIKAPNSPYQFKKGPKVSHVRQWAKSKGLNEYAVRNSIAKTGIRPRYFFDNCMQETFYGQAFDKFKTEIRIVSGERIAKGLKEILKK
Ga0209336_100006196F029278N/AMEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPKQLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAQDNEEAIFNNLHHILTTICRPVKKTLFGWKHINVDSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTCLIKQAEKMTKEAREELDLVNAGDGGTP

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