NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10006489

Scaffold Ga0209336_10006489


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10006489 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5055
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022667Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100064894F022667AGGAGMIIKKIVKHTVEVKEDYMRKYMAKTYNWDFERQIMSKIQKVQRNWDYEKYNSRMEKERKQNLEELLWVATNTPSKQYEGYYDLYYTDDRKVIEEIYKYTWGNTHRRNPPSNWRNPQANASVYMLWVAKEPNTQLNASADGSLKTNTHHERWLNAYVSIGISLGLTARAAAKIGYDTGFNKNHNDLDNNNFWEKRLGILEDVKLGKKKITYGLGIGYGQEEKERWESDETELMIGAANGSKITLTEQETHERTGLPMRKAKIINIKDKGNTKVKDPYGVEHVIPENASFKINSFNNRGIKITEIK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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