NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10024205

Scaffold Ga0209336_10024205


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10024205 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2115
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y
F097119Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100242052F007985AGGAMQQQYKVNNTTFDNIEEATYYVSMLSKKAQATATITPYTAPSKASVKLTVARNMLIREMLNWAGSFVHSMSPSTDVDWMYSVEDDTGFSDAGDTWYEDLGNVSFGSNLQWEDAKHDHQSAVDNFDSLLGTYNNYTTVDSLSEMLNTMYHTMSDHSSETDDYIGEIRHSIKQFCEGNSNIAHSYDHPTRRTTISFVGNVDKMYKAYMLERNS
Ga0209336_100242053F097119AGGAGMQKLISNREMFRQLLARDITAILETVNAGTWIDMTYLRRNLRNTLSARHYMNLCTAQGYCYTSFNDRFYRAMQSINDTGYGLTVRKDKQTNRLFVFSTKFADNYVEAIADTFEDWTACYKSNRGYEINVAKDEVA
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