NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10031052

Scaffold Ga0209336_10031052


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10031052 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001086Metagenome / Metatranscriptome782Y
F005611Metagenome395Y
F006282Metagenome / Metatranscriptome377Y
F022079Metagenome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100310524F005611GAGGMKKYKVRAEETIYAIYETEIEAKNEEEAKKIALDTCASDYKNSDWSNSAGDFTIEDIEEI
Ga0209336_100310525F006282N/AMKNNETLKNRLAELSKQNTLLADHLASMCCQADEDTPGEYRTEHFRSTMDDAYEYLEKINYFKRGEXKNIK
Ga0209336_100310526F001086AGAAGGMKKQDKCTGWAIVATIERSDGTWYDETILDIDDDTASSVDEFLTDYIKEKNEESNEK
Ga0209336_100310528F022079AGAAGGMKQYANYVVITDDKGKKRAFYNFHELIKYLDSFKMSFLPDNFTYTIHEE
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