Scaffold Ga0209336_10035977

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209336_10035977

Scaffold Ga0209336_10035977

Overview

Basic Information
Taxon OID	3300025137 Open in IMG/M
Scaffold ID	Ga0209336_10035977 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1627
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.2833	Long. (^o)	-134.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035273	Metagenome	172	Y
F046983	Metagenome	150	Y
F085562	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209336_100359774	F085562	GAGG	MDEFTRKSTQHMDQKLVKQAIKAIDKSPELKKIRSIKDGMSYSEINSGVNDQQYKDNYDKITWNKDKPKPKFKVRVNGKVINDEEE
Ga0209336_100359775	F046983	AGGAG	MKLPEYLNKESSHTTIGVNTMSLIGLSLLWGHMTDMISLWFLPLTILTLLAGFGNEIRKR
Ga0209336_100359776	F035273	GAGG	MQSKHSFKVWNEQGKYMTRYTTEEVYKITVNYPHTHRTLEFIGMDRGSCIMQAEVAKEEGDTVMLMISEDTVKMLQKEKMEI

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