NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209336_10036532

Scaffold Ga0209336_10036532


Overview

Basic Information
Taxon OID3300025137 Open in IMG/M
Scaffold IDGa0209336_10036532 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-32 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.2833Long. (o)-134.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F015402Metagenome / Metatranscriptome255Y
F016004Metagenome / Metatranscriptome250Y
F097387Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209336_100365321F016004N/ACKMNEELLKILETLKEDFEMLQDGRWDLNYSDGSEIQASLDNVEKAINIIKNNE
Ga0209336_100365322F006200N/AMSETKMSDWMERLVKKYSVPTNDTTDKRGMLNETQLKNLRNGKDKKTT
Ga0209336_100365323F015402N/AMGKIKKLLDFQFDFELNQEDIDEELMTRNDYDYQYEKWLKSKEFVEYVNGELDSTRPRYSEHDIMNATRYASEYITIEPSEVGKKVYDMLFSEKIEEYLTCKTDVWTTKNT
Ga0209336_100365326F097387N/AMKQIVLFLIIMVLMGFTISTNQKENSWEAKYHEVKKERDYYKKTSEQLLKNWKDCEEKLVEVI
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Institute for Fundamental Biomedical Research
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