Scaffold Ga0209634_1003594

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209634_1003594

Scaffold Ga0209634_1003594

Overview

Basic Information
Taxon OID	3300025138 Open in IMG/M
Scaffold ID	Ga0209634_1003594 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10401
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209634_100359416	F027536	AGGAGG	MRVSKVVPIDRVLNECRRGADDAWWDGKDDEAKLHEQEVKLYEQDKQEGILWVPNF
Ga0209634_100359417	F029123	AGGAG	MSYEVWFGKNGKWFGYHSFKHRMDAVRYELRYQSVFKDLTVEIRRREHASQ

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