NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1004373

Scaffold Ga0209634_1004373


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1004373 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9327
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017488Metagenome / Metatranscriptome240Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10043736F017488GAGGMAFITDGTGKVISFAEFTDVVQKDQRVLESNNLKIPAESGFADVTEFVEDMLEKSTNRLLLKIKASTWWQGYNAFVGAGISNINNLPSVNASLIDPGNLQGRRQQFTDMCVYYAFAEYLLPLIADFGNPESEETSKITYYNAKYNDLFNELLAIADWYDFDNSGTVDVDEKAVSYAPTRRSRSRRSITQVR
Ga0209634_10043737F052627AGGMSKRSSLITQITTNIAAHSNVSISSDLPYDSAGDPLYEKNMNVIYVGEQDIDVEELYGTLDQNPVFQTTTTIPVYLSTDAKVQFDDIETIVANLLIARSTITGTISSDSSYETEISEDVITYSFEYNFITV
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