Basic Information | |
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Taxon OID | 3300025138 Open in IMG/M |
Scaffold ID | Ga0209634_1016021 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4317 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004629 | Metagenome | 430 | Y |
F005038 | Metagenome / Metatranscriptome | 414 | Y |
F008915 | Metagenome / Metatranscriptome | 326 | Y |
F013234 | Metagenome | 273 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209634_101602112 | F013234 | N/A | MANIKYNKTIEKTILNRLCNGESIRKICKDPDMVSWATFSQKLKDSDKLQDQYYTCKKIGIEMVIAEAQDKLMDSINTLENSGKMDNSLPFAHLIKEMQSNAKWLSSVLSPVRYGKDTKLTLNGGDKP |
Ga0209634_10160212 | F008915 | N/A | MGFIVDNEITLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKSNNNNSLIIRQKAEQNQFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN |
Ga0209634_10160217 | F004629 | AGGA | MIPNRLTVDQLDNYFQTATYVERYMPSPLNMKNRRTEMFSLIDRLYGIGKDKDSYKGEDKPRMKIRLNGEQLQVYEFCILLLVKASEKDRDIISLRNFPYKRSFRQLKQFFLPSSHEKVRSDYYKALEELMSLYNRKGYKFICK |
Ga0209634_10160218 | F005038 | AGGAGG | MKAKDINIYNIFSATYKRKMFSFIGFGELSLMPKVKKPIRQISNVYQFPIKSYYKHYKT |
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