NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1018176

Scaffold Ga0209634_1018176


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1018176 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3990
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F014790Metagenome / Metatranscriptome260Y
F025595Metagenome / Metatranscriptome201N
F034715Metagenome / Metatranscriptome174Y
F059364Metagenome / Metatranscriptome134Y
F069051Metagenome124Y
F076488Metagenome / Metatranscriptome118N
F077775Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10181761F034715N/AHGPMMDNDTNCTRCGEKHSATHRVEEMTGWEDEDIESEVEEIF
Ga0209634_101817611F077775AGGAGGMKKSKCSICTKAFTHIKPDTLVGKLGPIPVQFCRPCFKKVMKHDHLALNDTRRAPKMVSF
Ga0209634_10181762F059364GGAGGVKTLLISGCSYGIVYSEIESELKDIFEVDRIVNLSSAGASPDRQIRVVIEWIAQNGKPDMVIMPVSHYNRFDLPIAKNFDPLHNLHLKASWQWKINEDAVDTNTVSIDTLKTFMKTGAMVYQIEHTEHDKLFVKLITFQAYLELNKIRHLIFDTGNYYEKQWMEYLSIDDENNSGYQPGMKKRDLIENSPGIYRLLSFCSNVWMYEQLTEDEKRNYVQWTDGNSAEGPLPYPLRQKTVNQLPHEYQQALNEDTATINHRKETVVKLMKHLHKEGAIHG
Ga0209634_10181763F000302AGGAGMVETMTQDTKERIRELEGQKIILEDRLEHLGYSGNLIKMHEIEEEIFEIDDTIVKLIGKV
Ga0209634_10181764F069051N/AMNHDVELFSDKNFRPDDYRWDLHKNGKLLNILYYGGTFGTFLKYFLERFSTKTPDMTVSPFTDIGTSHALSRKDFSGLIQAYHQSFINDNKGETNLPVCIIVPSKKKHYLYLKKGQWSRSGPQKVTPDDLWKNALGEMPERIRNYANNIVKLYDIKDTAHFSWIPKFIVRDWYKLEFLRNLEDTYNYQWFEAFKGHEFFKGQRVFELDLGAFFDWETFIENITGLNDMFDLSLDFDQQAEMKEIFNKGLSLDVVRQECNVAEDILERGLDTDLRRLDVATEAFIYAEMERKNDFIQMPLTNRFFRDTEEMHQFVEYYPNHYKAMNPNMPKFNGIPNPYHLHKNK
Ga0209634_10181765F014790N/AMQKQIENKIQEFAKSTGLTERVTMSHGTLYVLLLQPERCDFFHNVVRTFYKDNINPEGGVDMHPVGDEFAFDFVEGNKDNYHAENGVWSEFAEEEMFNNMDDEDESPAFPSYNEIPDEVDVMLNLEAEAKEGK
Ga0209634_10181767F076488GAGGMISEYDEVKAILVKHDVDLDKDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWIVDRVQALGLIKEEA
Ga0209634_10181768F025595AGGAGGMTVRYNFNGMSNRLEVLTSIKENIQDGDTDTAIDMINQMIELEPQPEETKPVADALDHHQIMQKGIVR

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