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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025138 Open in IMG/M |
| Scaffold ID | Ga0209634_1018176 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3990 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000302 | Metagenome / Metatranscriptome | 1337 | Y |
| F014790 | Metagenome / Metatranscriptome | 260 | Y |
| F025595 | Metagenome / Metatranscriptome | 201 | N |
| F034715 | Metagenome / Metatranscriptome | 174 | Y |
| F059364 | Metagenome / Metatranscriptome | 134 | Y |
| F069051 | Metagenome | 124 | Y |
| F076488 | Metagenome / Metatranscriptome | 118 | N |
| F077775 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209634_10181761 | F034715 | N/A | HGPMMDNDTNCTRCGEKHSATHRVEEMTGWEDEDIESEVEEIF |
| Ga0209634_101817611 | F077775 | AGGAGG | MKKSKCSICTKAFTHIKPDTLVGKLGPIPVQFCRPCFKKVMKHDHLALNDTRRAPKMVSF |
| Ga0209634_10181762 | F059364 | GGAGG | VKTLLISGCSYGIVYSEIESELKDIFEVDRIVNLSSAGASPDRQIRVVIEWIAQNGKPDMVIMPVSHYNRFDLPIAKNFDPLHNLHLKASWQWKINEDAVDTNTVSIDTLKTFMKTGAMVYQIEHTEHDKLFVKLITFQAYLELNKIRHLIFDTGNYYEKQWMEYLSIDDENNSGYQPGMKKRDLIENSPGIYRLLSFCSNVWMYEQLTEDEKRNYVQWTDGNSAEGPLPYPLRQKTVNQLPHEYQQALNEDTATINHRKETVVKLMKHLHKEGAIHG |
| Ga0209634_10181763 | F000302 | AGGAG | MVETMTQDTKERIRELEGQKIILEDRLEHLGYSGNLIKMHEIEEEIFEIDDTIVKLIGKV |
| Ga0209634_10181764 | F069051 | N/A | MNHDVELFSDKNFRPDDYRWDLHKNGKLLNILYYGGTFGTFLKYFLERFSTKTPDMTVSPFTDIGTSHALSRKDFSGLIQAYHQSFINDNKGETNLPVCIIVPSKKKHYLYLKKGQWSRSGPQKVTPDDLWKNALGEMPERIRNYANNIVKLYDIKDTAHFSWIPKFIVRDWYKLEFLRNLEDTYNYQWFEAFKGHEFFKGQRVFELDLGAFFDWETFIENITGLNDMFDLSLDFDQQAEMKEIFNKGLSLDVVRQECNVAEDILERGLDTDLRRLDVATEAFIYAEMERKNDFIQMPLTNRFFRDTEEMHQFVEYYPNHYKAMNPNMPKFNGIPNPYHLHKNK |
| Ga0209634_10181765 | F014790 | N/A | MQKQIENKIQEFAKSTGLTERVTMSHGTLYVLLLQPERCDFFHNVVRTFYKDNINPEGGVDMHPVGDEFAFDFVEGNKDNYHAENGVWSEFAEEEMFNNMDDEDESPAFPSYNEIPDEVDVMLNLEAEAKEGK |
| Ga0209634_10181767 | F076488 | GAGG | MISEYDEVKAILVKHDVDLDKDIDYMMETIVYGEPLFQELFEYFIGDMPYDVAKGRADLMSDEWIVDRVQALGLIKEEA |
| Ga0209634_10181768 | F025595 | AGGAGG | MTVRYNFNGMSNRLEVLTSIKENIQDGDTDTAIDMINQMIELEPQPEETKPVADALDHHQIMQKGIVR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |