NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1034646

Scaffold Ga0209634_1034646


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1034646 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2632
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026438Metagenome198N
F065123Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10346463F026438N/AMTNHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQGSLTKKLSLDDVIKSELIQTKIDQYEPNDEKDKKKFEFIVKAAKETAQNHLDNIAELDNQDWQDEIEQVLWTPPVNTYWLMYIDLVGKDIFGDLKNKFGTATLTKTKGWTYTNVKCPDRPFYSDVQQISLYQKSLGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDKLAWLCCPDFSDIKKKSFWWTGVAQEQINRLLKHYE
Ga0209634_10346465F065123N/AMKERTLRDAIQQFRNNIVDSDYAKLGAKGNYLTVGYRIRFVRDYFGERMSIQTDSTELANGSHKFRANIYIDDKLVSVGESKQMKNSDKEFEKQQSVSIGRSLSILGFMGDEIATAEEMEDFLKPQKKVVKDKTFENG
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