NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1051781

Scaffold Ga0209634_1051781


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1051781 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2022
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053550Metagenome / Metatranscriptome141Y
F092748Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10517813F053550AGTAGGLKSIITLYFQLKDLGHFNMREEIKKARIKKRVLKQYPNASVDHTNTGIKIMSGDVFIAEEFYLPTTNCEEKAWEYAAIACKTSQQFNRTHPMRMDLADIESKINRINKRRGPRIKRK
Ga0209634_10517815F092748N/AMKDVIKTRSSLNQTAAIDQDKVRHLGKNYASIDFEIKEHVDASEFKYAKMKPVIGTFIIGNRRVEVTYSELNHIMRTASDSMNLCDQSYRMGKWGKA

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