Basic Information | |
---|---|
Taxon OID | 3300025138 Open in IMG/M |
Scaffold ID | Ga0209634_1059803 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1838 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 50.0 | Long. (o) | -145.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004162 | Metagenome | 450 | Y |
F007537 | Metagenome / Metatranscriptome | 349 | Y |
F017556 | Metagenome / Metatranscriptome | 240 | Y |
F089527 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209634_10598032 | F007537 | N/A | MKKLLYFLVVGVLFTSCQKDEFEIPTNYQFEMTGRTSQDLNGFYHVEINPSEDKQSLHRFGAYVTNVDKFSLPTKIIWRCDAFWYTPDTLGHTYIEIGNVPTGESVWSWENFAVTGYGGMTVPIVNGTSHADPQVDSAFCMMAPIGAMIGDTVTIYGQAWFEEGDVIKYDNINVIFE |
Ga0209634_10598033 | F017556 | N/A | MSYAKFKEGQAVSFPSAGTVGDRARKGGIITAVEKMYELKDENKRFYPNGICRGELTTIKELSKGTFKGYAYKCKTIQPKGYTPEIVMVEEFKLKLSTKKQVTNSYTIY |
Ga0209634_10598034 | F089527 | GGAG | MNKQGKTDKQYQDSAKFAWYGVVGMIILLVLSSLLIGCATTQPTKKCCEKNHVITEWDGDRQINWYSSTEEK |
Ga0209634_10598036 | F004162 | N/A | MGKSQKVATLLGERQKIEKEIENIQKSCQHPTKSIKNVRERLDSTIMVIRWTCDTCSSTLGIPNNNELQNYLKQ |
⦗Top⦘ |