NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209634_1069188

Scaffold Ga0209634_1069188


Overview

Basic Information
Taxon OID3300025138 Open in IMG/M
Scaffold IDGa0209634_1069188 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1665
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F022282Metagenome215Y
F062169Metagenome / Metatranscriptome131N
F105878Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209634_10691884F022282GGAGGMPKFYFRLDLGDLVNFKASRVTEDYMDDTMLTGIIVEQRYVFTADNRYKVRTGDQDYWVGEDKLTLISGTKNKT
Ga0209634_10691885F062169GGAGMPVKEHIENILNAEGQGALDAWYDAIKEHPQDAMKIHDVVVDHLVENTFLY
Ga0209634_10691886F006867AGGAGMLYGKELAKSIQKRCHIQPGMLIKSTAGTELGKLALVVGLSSACKFDRDYEGAEDHIFYRCEPFDGTPPFVDYVSNMEQIS
Ga0209634_10691887F105878GGAGMKVGQIIKINKTGLASFTPAIRNKIEGEIGLVIQEKYDLSHKLDQDKLPERVKVYPSLVQFESLQNMNFLDMGAVMVFPDQAEIIN
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