Scaffold Ga0209756

Basic Information
Taxon OID	3300025141 Open in IMG/M
Scaffold ID	Ga0209756_1000040 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025141 Open in IMG/M

Scaffold ID

Ga0209756_1000040 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	123028
Total Scaffold Genes	151 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	133 (88.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

123028

Total Scaffold Genes

151 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

133 (88.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)	Depth (m)	85
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-104.89

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019821	Metagenome	227	N
F021526	Metagenome	218	Y
F027020	Metagenome / Metatranscriptome	196	Y
F048919	Metagenome	147	Y
F088735	Metagenome	109	N
F093706	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_100004010	F088735	AGGA	MTIFENPDFYYNDLTHLITNEIITSIEKGISGVEGYARWKYPVFIDAEDDLIDWSFDVQYVDDVPGRTFDVWASAGFNEDYIPGVTFTIVLPRGTALKDADIDYPELFGSVAHELHHIAQKNEGICEYEGEAYNDQVRYYLNPTEIPAFHIGFRAQCALSGADMETEMRSYLSLQNINKEETKLIIESWMNPSFEIAELNLLV
Ga0209756_1000040150	F027020	AGGAGG	MSSAYSLRAGLLSQAEGILMTKYQIEYDRVRYLCDRDLIDPKTVTWPEPPETEAILAEAEKLYKFVQTK
Ga0209756_100004026	F048919	GGAG	MSQHKTKSNQEFSIERPIKKSRKAHKCCSCQKTIPAKSSYVRTVGVSESYRHYGNDFFSNAWHQECLEDHQGYIRDRLRRQG
Ga0209756_100004030	F019821	AGGAG	MTISNKTTLQELIKLGLFSEADIEKFNKKLQRAADSQARKALVDGTMSAIKALVQSEVHNGNKYWSVKTAAHSLGFMSYIQADRGIVLKALTKLTEEGYLTKIGLKTVEGKLTELTPKQVNAFQIRYVVTPVEAEGAIVPVAK
Ga0209756_100004032	F021526	AGGA	MKYFSIDYRSPPSGMGQIIDTKKPEKVGDQYNFILIDYGTDPHEDPSYVMTKYFYSEQAAEEGWAGAVLPQIFQFLRDSKVTHVHDSELSYEEEGADEDGYFLLDRWIEIMNSYL
Ga0209756_10000406	F093706	AGGAG	MYPKAKYINIFESKFVRPNATGHAGATYVTNSDKMVTIRLDAIISIHTERIEYSHHRYCTVTMSNGFRYKITEETAEEIRLCLNIDSIHEKRGEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209756_1000040

Overview

Ecosystem & Geography

Associated Families

Sequences