NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1009519

Scaffold Ga0209756_1009519


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1009519 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6614
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057678Metagenome / Metatranscriptome136N
F061281Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10095195F061281N/AMDKFQKKVLKQFPDAYPETSDHGIRIVSGENFIAKEFYVPDTQDESKAWEYAAMACKLTQNFNRAHPLRMDLTDIESKLARINRRKKKGRRVK
Ga0209756_10095196F057678N/AMVEYEVNDRVVFGYNNVNEVAVVTNVRRHKNNITGYDIRSEKGSGYIIVQVDANLTTRQYNKRVEYPLINSKLTAAWIGSDSDTNLFAKEGVGHTRQNFSKSMPIYLDGESGGGIQHFEKHNDLLFPTQGPRSF
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