NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1020664

Scaffold Ga0209756_1020664


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1020664 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3818
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022523Metagenome214Y
F026408Metagenome / Metatranscriptome198Y
F063091Metagenome130Y
F101067Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10206643F026408AGGAMSNRRGMTLLLVLVMSALIGISAMLLFSTANMEMMIAGNTRRINQAKISAASGLAHFTALGLTYDTLRERAGGLQTLQILPETQLGAKTSYEVKVHFYPRLSERQYVVESTGYYKKADRIISVHPIKALFEGEQ
Ga0209756_10206644F063091GGAGGMMYKSLILLVFANLFNQAYNLEQIQCPKWVPGTDQVLPQGVSLSPELELKNRVRCYCEVVKAKEAQCLARHVPATICKARTRIWVENNLKLKEAFQLVNDVAPLPRRDRMMNVEP
Ga0209756_10206646F101067N/AMRVPTLDLHGLKHHEVQNVVARFIEDWLAKDLFVDIVTGNSEQMLFEAVKVIQQYGLQYNTGLPYHQGRIRVVMYDEYH
Ga0209756_10206649F022523N/AMKIGDLVEFTYGRVGGQIEGIGIFAEEGLFGKHKILFMNKAYWVPESCIKVISMKRKDPANEPLLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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