NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1032928

Scaffold Ga0209756_1032928


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1032928 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2754
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024646Metagenome / Metatranscriptome205Y
F046002Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209756_10329286F024646AGGAGMTEHQLEEIHRYTKYKVVEVLINKHQEGNTLSSLEEVEDVAQDIVDMLGLVGAKYYAKGK
Ga0209756_10329287F046002GGAGMLKEKDKNFLFKWFGSLFTVWYICAGLYIHNPYVLEIIYWPLHTHDIEIDVVESTVDWQSYIDKLDRDLEKGFLYIDETTEEIDDSDLEIIEEVIKIRKMDRVLEKINE

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