NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209756_1104414

Scaffold Ga0209756_1104414


Overview

Basic Information
Taxon OID3300025141 Open in IMG/M
Scaffold IDGa0209756_1104414 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1216
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005431Metagenome / Metatranscriptome401Y
F056908Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209756_11044142F005431AGGAMMDFDDDKQGYSAVIYIMESSNSVVVHFGGFNDLSECRYFSSHIMKDFGIDQLLNIPPGVTLH
Ga0209756_11044143F056908N/ALSPQNKKENRPCWETFRTWLNKDDKLRNEYAQAKQDGIEFCLSDAQDLINESIANSKLKEKTDLGQTHLVKAFVDLAKWKSERLSPKIYQKKDSLSMNFDKNTPLVVKWDK

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