Scaffold Ga0209756_1107381

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209756_1107381

Scaffold Ga0209756_1107381

Overview

Basic Information
Taxon OID	3300025141 Open in IMG/M
Scaffold ID	Ga0209756_1107381 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1191
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	85
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062830	Metagenome	130	N
F066236	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_11073815	F062830	AGGAG	MEYRIYRHPEGIGLNGKEFAMDKKEIMLFNTINDAEKFLIKAIGKKATRVELEDDYGLHIEENVDE
Ga0209756_11073816	F066236	AGGAG	MNKYEKIEWLHFAISEAINGNTGELTNALQIIEQLREPYLKERRT

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