Scaffold Ga0209756_1213766

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209756_1213766

Scaffold Ga0209756_1213766

Overview

Basic Information
Taxon OID	3300025141 Open in IMG/M
Scaffold ID	Ga0209756_1213766 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	729
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	85
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001712	Metagenome / Metatranscriptome	648	Y
F027534	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209756_12137661	F027534	GAGG	MTFGYDDVTFTSIGTATAETQLNSGTSLSAPDPAHAFNAVVPYQMELGAFTVDESLLTAFRIQSDDVAIEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQALVANTVAPG
Ga0209756_12137662	F001712	N/A	MAASAGQPIATRAQNFVNSLVGRISGYNPFPAASGGAVPQTISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKSKAKTLGKSLLTGGVLGGLFSTGNPHNTNLISSSPALTVTSSEVSYT

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