NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209609_10016901

Scaffold Ga0209609_10016901


Overview

Basic Information
Taxon OID3300025145 Open in IMG/M
Scaffold IDGa0209609_10016901 Open in IMG/M
Source Dataset NameAnoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3361
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Lake Kivu
CoordinatesLat. (o)-2.0288Long. (o)29.1756Alt. (m)Depth (m)325
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072364Metagenome / Metatranscriptome121N
F083739Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209609_100169011F083739AGGAMNQPTEKDITALREKFKGYPLFQISDPTTGETFIIRGSNWDEFAQIGNVKPGRENRIPLNMVKAYVVWPEIDAVDLEYNKSGNWQPGRIVALAEQIQEL
Ga0209609_100169012F072364GAGGMPDLIEAIGFADGISGNSVKMFIDGVPVLALQNFNWKIKKAKKPLYGAGFKAAHGVTRSAHKVYEIDFEIKEILTNSGINAAETAKNAAFLTTFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATGATGVF
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