NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210057_1070219

Scaffold Ga0210057_1070219


Overview

Basic Information
Taxon OID3300025150 Open in IMG/M
Scaffold IDGa0210057_1070219 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2425
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → unclassified Candidatus Peregrinibacteria → Candidatus Peregrinibacteria bacterium CG_4_10_14_0_2_um_filter_43_11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047487Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0210057_10702192F047487GGGGGMNALYGYIAVFVVIVFLGAGWAVEHDKRITYQAKVEQAGADALAQTEKINAKHRKEMQNAEQNTIIATNSISDWYRAHPAVRVRYANTDCSAMPSTDNNPGIPDDSTASGYASPYSPESTEQVASRLDQLQKLLRADGVRVE
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Institute for Fundamental Biomedical Research
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