NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1000094

Scaffold Ga0209645_1000094


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1000094 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42282
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (22.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003188Metagenome / Metatranscriptome502Y
F097317Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209645_10000943F097317N/AMLELKNYLEEQFKMLDRGIVATPDSREYLESFANANGGSADLLLMQLAMNYGYKIALENVEETLNAQ
Ga0209645_100009441F003188N/AMKLVRDKIRKVLKARFDVSYRIKIKEPDLETMNKKIFVEVIDQLKKIEDRKDFLADEIGMDMTVYEDQFFSVIENLFKLAFNKSQLGLIQMYLYQLTPDKDWDGMITIEQGKSEKTVPFKSADEVWDVIKKFSK

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