NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209645_1000194

Scaffold Ga0209645_1000194


Overview

Basic Information
Taxon OID3300025151 Open in IMG/M
Scaffold IDGa0209645_1000194 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32461
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027807Metagenome / Metatranscriptome193Y
F034404Metagenome175N
F048234Metagenome148N
F066271Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209645_100019412F027807GAGGMSSNEFIEPKLIKSDIIEELDSLVGQLRDLTIRKPKHPQEAHMEARLADFLELAEQDFIRGWTDWEEGVQHKKGQSEAYNAGYADCYEYENRGGR
Ga0209645_100019413F048234GGAGMQIAIRISKQVDDWDEFVDELEGIERTAVADDYDEEAKVVTLLVDRKSIDDYYHPVGGRYPIEFEGRTEWVEEVGVCVHSCKWHGHDIINAEQVCSELEGFTYVE
Ga0209645_100019447F034404GGGGGMLQTVTIDWQPVLQGSMPRHEGSYLVAFDDGAVETYPMSDQDIKRGEVKDGQTHGLYWAEGIPSPFDYGED
Ga0209645_100019451F066271N/ATTLSFRITDCLYAIIAGQQEDVVMCVQSQRQYFGERHHIVVTDRIAELLSRLGRDKGVTEEEYLKRLSRHPNEDYFIAEIARHYG
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